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Older models, such as CESM 1.x, require that all parts of NetCDF be in a single directory. Unfortunately, the modules on the cluster do not provide this, so we need to create our own joined directory on the version of NetCDF we want to use.
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The script below will; create a directory called netcdf4 in your home directory that will then be populated with symlinks to the NetCDF libraries. This script should be run in an interactive session, or it will not find the directories in which the components of netCDF live in. |
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#!/bin/bash
mkdir -p ~/netcdf4/bin ~/netcdf4/include ~/netcdf4/lib ~/netcdf4/lib/pkgconfig
cd ~/netcdf4/bin
find /opt/apps/software/data/PnetCDF/1.9.0-intel-2018.5.274/bin/ -maxdepth 1 -type f -exec ln -s {} . \;
find /opt/apps/software/data/netCDF-Fortran/4.4.5-intel-2018.5.274/bin -maxdepth 1 -type f -exec ln -s {} . \;
find /opt/apps/software/data/netCDF/4.6.2-intel-2018.5.274/bin/ -maxdepth 1 -type f -exec ln -s {} . \;
cd ~/netcdf4/include
find /opt/apps/software/data/PnetCDF/1.9.0-intel-2018.5.274/include -maxdepth 1 -type f -exec ln -s {} . \;
find /opt/apps/software/data/netCDF-Fortran/4.4.5-intel-2018.5.274/include -maxdepth 1 -type f -exec ln -s {} . \;
find /opt/apps/software/data/netCDF/4.6.2-intel-2018.5.274/include -maxdepth 1 -type f -exec ln -s {} . \;
cd ~/netcdf4/lib
find /opt/apps/software/data/PnetCDF/1.9.0-intel-2018.5.274/lib -maxdepth 1 -type f -exec ln -s {} . \;
find /opt/apps/software/data/netCDF-Fortran/4.4.5-intel-2018.5.274/lib -maxdepth 1 -type f -exec ln -s {} . \;
find /opt/apps/software/data/netCDF/4.6.2-intel-2018.5.274/lib64 -maxdepth 1 -type f -exec ln -s {} . \;
ln -s libnetcdff.so.* libnetcdff.so
ln -s libnetcdf.so.* libnetcdf.so
cd ~/netcdf4/lib/pkgconfig
find /opt/apps/software/data/PnetCDF/1.9.0-intel-2018.5.274/lib/pkgconfig -maxdepth 1 -type f -exec ln -s {} . \;
find /opt/apps/software/data/netCDF-Fortran/4.4.5-intel-2018.5.274/lib/pkgconfig -maxdepth 1 -type f -exec ln -s {} . \;
find /opt/apps/software/data/netCDF/4.6.2-intel-2018.5.274/lib64/pkgconfig -maxdepth 1 -type f -exec ln -s {} . \;
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